PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021097-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 964aa    MW: 104949 Da    PI: 8.1682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021097-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.6e-19413513199
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l
  NNU_021097-RA 413 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQPEGLPLKVQDAKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKL 506
                    89**************************666667778***************9989999999***9.********************987.77778 PP

                    EEEEE-S CS
             B3  93 vvkvfrk 99 
                    v++++++
  NNU_021097-RA 507 VMGFRKA 513
                    8777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-30410514IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.07E-19410512IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-22411512No hitNo description
PROSITE profilePS5086311.406413514IPR003340B3 DNA binding domain
SMARTSM010191.5E-21413514IPR003340B3 DNA binding domain
PfamPF023623.1E-16413512IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 964 aa     Download sequence    Send to blast
MTTATTTTTT TTSLGFLFFV LICFCGSESG DRRTSMSSSS APAPAAASSK ICFNQDCKDA  60
KSERLRKGWR LRNGEYAELC DRCASAFEEG RYCETFHSEA AGWRGCESCG KRVHCGCIVS  120
FHSFLLLDAG GVECIACARK NMIPASTIWP SSFFLPLPLP ERLKDLSIKN WSHTSGPSAV  180
AAQWRQPPNL WNTATSQPEL HPRLPYEVDR LGAVSAMDKK KSDDPSERLA SSSLKLPTSD  240
RLANGNAGID TLAGLTTFHR EEGNLDGSHH SYRHKGENDP ADTRKGDTSM NNDIHPSSFV  300
NISLSSSIPK DEPSTPHFGF GAPYVSTSDT NAATKTSGTQ SQRQTPPPPL TKQICASPNN  360
GGDSSTESQL RNGRPRGDAR GRNQLLPRYW PRITDQELQQ ISGDKNAVIT PLFEKMLSAS  420
DAGRIGRLVL PKKCAEAYFP AISQPEGLPL KVQDAKGKEW VFQFRFWPNN NSRMYVLEGV  480
TPCIQSMQLQ AGDTVTFSRI DPEGKLVMGF RKASSVPADQ DNQTHKSGSG ISANGEVKSA  540
DPASTWSKVD KSGYIAKDVP GAKASIPSKR KSSTLGSKSK RLRIENEDLI ELKLTWEEAQ  600
GLLRPPPNHA PSIVVIEGHE FEEYEEAPVL GRPTIFATTN QGECQCYISS MLVIRSNGLS  660
VKTVLSGVNY PLMHFFHPDG PVPKTHGIQK AQELSMEQLE EIISSGKSTA SKRTKAAKQD  720
KDAVEASDGL DTLANLAIMG EGDALPPSAQ PTTKHPRHRP GCTCIVCIQP PSGKGPKHKQ  780
TCTCNVCLTV KRRFRTLMLR REKRQSEKEA ETARKKQQQI HLPKKTTQED DPPVSSNARN  840
SSPNQKQSEN GVSEEDSNRK KPSCSPLKGQ IDLNIQPERE DEPPSVSESA SMLRMIQDAT  900
DMYLRKQRLS SSATRDLNEG GGDGAGAGGD KTDGISHGSN HLEVDADHPI TLSMSMSAPT  960
SATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1341252813130DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1790803KRRFRTLMLRREKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278377.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067G7Y20.0A0A067G7Y2_CITSI; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-136HSI2-like 1